Key Takeaways:
- Your gut microbiome changes with age, and some bacteria accelerate ageing by promoting inflammation, damaging your gut lining, and increasing disease risk.
- Inflammaging is a major culprit in ageing-related diseases like heart disease, diabetes, and neurodegeneration. An imbalanced gut fuels this chronic, low-grade inflammation.
- You can slow down gut-driven ageing by supporting your microbiome through diet, lifestyle, and targeted interventions like prebiotics, probiotics, and exercise.
Your gut is home to an astonishing 39-100 trillion microbes, making up what scientists call your gut microbiome. That’s more than 10 times the number of human cells in your entire body! This vast microbial community plays a critical role in your digestion, immune function, and even mood.
For years, gut bacteria have been hailed as our allies—helping us absorb nutrients, fight infections, and produce essential compounds. But recent research has uncovered a shocking truth: some of these microbes may actually accelerate ageing.
As you get older, your gut microbiome shifts, leading to an imbalance where harmful bacteria gain the upper hand. This fuels chronic inflammation, weakens the gut lining, and contributes to age-related diseases like heart disease and neurodegeneration (R).
So, what exactly is happening in your gut as you age? And more importantly—how can you fight back?

How Your Gut Microbiome Contributes to Ageing
Your Gut Bacteria Directly Influence Biological Age
Scientists have identified specific gut microbes that are linked to ageing acceleration. A recent study found that bacteria like Streptococcus, Actinomyces, and Butyricimonas play a direct role in biological ageing by altering metabolism and triggering inflammatory pathways (R). These microbes are more common in older individuals and are associated with increased frailty, immune dysfunction, and disease risk.
In contrast, people with diverse and well-balanced gut microbiomes tend to have lower biological ages than their actual chronological age. This suggests that gut health plays a fundamental role in how fast or slow you age (R).
“Inflammaging”: When Your Microbiome Fuels Chronic Inflammation
Ageing is often accompanied by a state of persistent, low-grade inflammation known as inflammaging. This occurs when an imbalanced gut microbiome stimulates the immune system to remain in a constant state of alert.
Pro-inflammatory bacteria, such as Proteobacteria, become more abundant with age, releasing toxins that keep the immune system activated. Over time, this leads to tissue degeneration and an increased risk of age-related diseases like heart disease, arthritis, and neurodegeneration (R).
But the biggest concern? Inflammaging speeds up the biological clock—meaning your cells age faster than they should.
A Leaky Gut Means Faster Ageing
Your gut lining is a crucial barrier that keeps harmful substances out of your bloodstream. But as you age, gut bacteria can weaken this barrier, leading to a condition called leaky gut.
Harmful bacteria produce toxins called lipopolysaccharides (LPS), which enter the bloodstream and trigger widespread inflammation (R). This can damage organs, contribute to metabolic disorders, and accelerate skin ageing, brain fog, and joint pain.
Research has linked gut permeability to a higher risk of conditions like Alzheimer’s, type 2 diabetes, and autoimmune diseases—all of which are associated with premature ageing (R).
Your Gut and Brain Are Connected—And Your Microbiome Affects Cognitive Ageing
Your gut microbiome doesn’t just impact digestion—it directly affects brain health and cognitive function. Scientists have found that changes in gut bacteria influence neurodegenerative diseases like Parkinson’s and Alzheimer’s (R).
How? The gut and brain communicate through the gut-brain axis, a complex signalling network involving the nervous system and immune system. When harmful bacteria overgrow, they produce neurotoxic compounds that impair memory, learning, and emotional well-being (R).

A study on elderly individuals showed that those with less diverse gut microbiomes had higher rates of cognitive decline compared to those with healthier, more balanced microbiomes (R).
The Microbiome of the Elderly Contains More Harmful Bacteria
As you age, the composition of your gut microbiome changes. Research shows that older adults have a higher proportion of pro-inflammatory bacteria like Proteobacteria and Enterobacteriaceae, which are associated with chronic diseases (R).
At the same time, beneficial bacteria like Bifidobacteria and Lactobacilli—which support digestion, immunity, and metabolic health—tend to decline with age (R). This shift creates a microbiome that is less protective and more harmful, increasing susceptibility to disease and accelerating ageing.
How to Slow Down Gut-Driven Ageing
Eat More Prebiotic and Probiotic Foods (R)
You can restore microbial balance by incorporating probiotic-rich foods like:
- Yoghurt and kefir (contain live cultures of Lactobacilli and Bifidobacteria)
- Fermented vegetables (kimchi, sauerkraut, miso)
- Kombucha and tempeh
- Prebiotic foods like garlic, onions, leeks, bananas, and oats feed beneficial bacteria, helping them thrive and counteract harmful microbes.
Reduce Processed Foods and Sugar
A high-sugar, ultra-processed diet fuels the growth of pro-inflammatory gut bacteria while depleting beneficial strains (R). In contrast, a high-fibre, nutrient-dense diet supports microbial diversity and reduces inflammation.
To protect your gut as you age, focus on:
- Whole foods like vegetables, nuts, seeds, and legumes
- Healthy fats from olive oil, avocado, and fatty fish
- Minimal added sugars and refined carbs
Exercise for a Healthier Microbiome
Regular physical activity can positively alter gut bacteria composition, promoting microbial diversity and anti-inflammatory effects. Studies show that people who engage in moderate exercise (such as walking, Pilates, or strength training) have healthier microbiomes compared to sedentary individuals (R).
Exercise also reduces intestinal permeability, lowering the risk of leaky gut and inflammation (R).
Consider Emerging Microbiome Therapies
Innovative treatments like Fecal Microbiota Transplantation (FMT) are being explored for their potential to reverse ageing-associated microbiome changes. This procedure involves transplanting gut bacteria from a young, healthy donor into an older individual—restoring microbial balance and improving metabolic and immune health (R).
Although still experimental, early studies show promising anti-ageing effects.

Your Gut Holds the Key to Longevity
We used to believe that ageing was an unavoidable process. But cutting-edge research suggests that your gut microbiome plays a significant role in how fast or slow you age. By making smart dietary and lifestyle choices, you can slow down microbiome-driven ageing and promote longevity.
Take charge of your gut health today—because a balanced microbiome is one of the most powerful tools for living a longer, healthier life. Want to dive deeper? Read our blog on Optimal Gut Health and Healthy Aging: A Dietary Guide.